生物资讯程式语言应用Part.ppt

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1、生物资讯程式语言应用Part Still waters run deep.流静水深流静水深,人静心深人静心深 Where there is life,there is hope。有生命必有希望。有生命必有希望OutlineIntroduction.Installation.Background knowledge in Perl.Data type.Control structure.Regular expression.Overall practice.IntroductionPerl is free software.Larry Wall(He is a linguist).The his

2、tory of Perl language.1987-Perl 1.0.1994-Perl 5(contain OOP).OOP(object oriented programming)物件導向程式語言Perl 5.8.0 support unicode.2003 Perl 6.Now.Characteristic.The script language base on C language(具跨平台的特性).Installation Perl is the default language in any distribution of Linux.Perl can be executed a

3、nd worked by the ActivePerl package in windows platform.http:/ to edit Perl program?Notepad in windows,UltraEdit and any text editor.Installation cont.Practice.Download ActivePerl software file.Install ActivePerl.Background knowledgeData type in Perl.Control structure in Perl.Regular expression in P

4、erl.Data type in PerlLike EnglishScalar(純量變數)比喻單件事物.數字常數$x=5;字串常數$y=“Hello”;The special expression of Perl.Print“Hello”.”World”;(Hello World).Print“Hello”*2;(HelloHello).字串與數字間的轉換$x=123;$y=“456”;Print$x+$y;(數字)Print$x.$y;(字串)Data type in Perl cont.Practice.Using scalar.Special expression.字串與數字間的轉換.D

5、ata type in Perl cont.Array(陣列).The definition of Array in Perl.student=(9154610,9154611,”9154612”);my student;$student0=9154610“;$student1=“9154611“;$student2=“9154611”;Array 單數的取用.print$student0,n;print$student1n;print$student2.n;Array 複數的取用.print student,“n”;(全部一起print出來)以單數取用方式print出複數資料 (in con

6、trol structure chapter).Data type in Perl cont.Practice.Using array(definition).單數取用.複數取用.Data type in Perl cont.Hash(雜湊).$純量=單一=單數陣列=串列=複數%雜湊=串列=複數定義陣列=類似ipstudent=(9154610,9154611,”9154612”);定義雜湊=類似dns%students=(Peter=9154610,Mary=9154611,Cathy=9154612);Data type in Perl cont.Hash(雜湊).定義雜湊=類似dns%s

7、tudents=(Peter=9154610,Mary=9154611,Cathy=9154612);Hash 單數的取用.print$studentsPeter,n;print$studentsMary,n;print$studentsCathy,n;Hash 複數的取用.print%students,n;以單數取用方式print出複數資料 (in control structure chapter).Data type in Perl cont.Practice.Using hash(definition).單數取用.複數取用.Control structure in PerlIf sta

8、tement(陳述式).For loop(迴圏).Foreach loop(迴圏).While loop(迴圏).Control structure in Perl cont.If 條件判斷條件判斷If 條件成立則執行條件成立則執行若若If 條件不成立則執行條件不成立則執行(else statement可有可無可有可無)If statement(陳述式).Control structure in Perl cont.Practice.If statement.If-else statement.Control structure in Perl cont.For loop(迴圏).$#arra

9、y:取得取得array的大小的大小$i+:等同於等同於$i=$i+1;$sum+=$i:等同於等同於$sum=$sum+$i;Control structure in Perl cont.Practice.For loop 迴圏.以array單數取用方式print出array複數資料.以hash單數取用方式print出hash複數資料.Control structure in Perl cont.Foreach loop(迴圏).Like for loop.For loopForeach loopControl structure in Perl cont.Practice.Foreach l

10、oop(迴圏).以array單數取用方式print出array複數資料.以hash單數取用方式print出hash複數資料.Control structure in Perl cont.While loop(迴圏).While 判斷式判斷式Control structure in Perl cont.Practice.While loop(迴圏).1+2+100.Regular expression in Perl樣式(pattern)的表達.繫結符號=.=可用來將右邊的樣式比對左邊的字串純量，成功傳回1，失敗傳回0.表否定則可改用!通常搭配判斷式使用.Regular expression i

11、n Perl cont.比對.$:代表字串中比對成功之前的部分.$&:代表字串中比對成功的部分.$:代表字串中比對成功之後的部分.Regular expression in Perl cont.字元取代.$var=tr/xxx/yyy/把變數$var 內的 xxx 字元都逐一代換成 yyy 字元字串取代.$var=s/xxx/yyy/把變數$var 內的第一個 xxx 子字串整個代換成 yyy 子字串$var=s/xxx/yyy/igI:忽略大小寫g:取代$var 字串內所有符合的子字串Regular expression in Perl cont.Practice.比對.字元取代.字串取代.